Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs143153847 | chr17:45428645 | C/CTGTGTGTGTGTGTGTGTG | 1.42E-7 | 189 | 1.13 | 8.23 | 13.73 | KM Plot |
| LIHC | rs143369144 | chr14:77214160 | G/A | 0.000114 | 188 | 13.97 | 11.15 | 3.23 | KM Plot |
| LIHC | rs143635170 | chr11:73561410 | G/GCTCACAGATCATC | 1.2E-5 | 192 | 13.57 | 12.8 | 1.87 | KM Plot |
| LIHC | rs143896635 | chr22:30462705 | G/A | 2.7E-9 | 190 | 13.57 | 10.87 | 0.63 | KM Plot |
| LIHC | rs1439377 | chr4:44628607 | C/T | 1.54E-5 | 190 | 14.8 | 13.53 | 3.4 | KM Plot |
| LIHC | rs144260138 | chr12:112244140 | AAAAC/A | 4.92E-6 | 191 | 13.03 | 14.98 | 4.03 | KM Plot |
| LIHC | rs144738933 | chr11:6928473 | C/G | 7.01E-7 | 190 | 13.73 | 12.65 | 1.13 | KM Plot |
| LIHC | rs145238241 | chr2:86419114 | GGGA/G | 0.000272 | 191 | 13.6 | 1.72 | 10.98 | KM Plot |
| LIHC | rs145777382 | chr12:112468744 | T/TA | 0.000388 | 190 | 13.65 | 13.6 | 2.9 | KM Plot |
| LIHC | rs145873503 | chr12:112343625 | G/GGCTAT | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs145942514 | chr12:112285145 | C/CTG | 6.38E-6 | 192 | 12.57 | 14.98 | 4.03 | KM Plot |
| LIHC | rs145949746 | chr3:127812292 | CA/CAA | 0.000438 | 189 | 14.35 | 3.23 | 11.13 | KM Plot |
| LIHC | rs1459703 | chr14:70469905 | A/T | 3.15E-6 | 192 | 13.15 | 13.97 | 1.13 | KM Plot |
| LIHC | rs146262068 | chr19:59077090 | G/A | 5.45E-5 | 189 | 13.53 | 13.92 | 0.65 | KM Plot |
| LIHC | rs1463093 | chr4:88792520 | T/C | 5.72E-11 | 190 | 0.67 | 10.63 | 14.35 | KM Plot |